PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G196500.2
Common NameB456_006G196500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 230aa    MW: 25636 Da    PI: 7.7608
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G196500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.5e-1156108155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++ +h  +Er+RR+++ + ++ Lr+llP       ++K   ++    Av Y+k+Lq
  Gorai.006G196500.2  56 KKSMHRDIERQRRQEMSTLYASLRTLLPLeY---IKGKRAISDHMNGAVSYVKDLQ 108
                         6899*************************77...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.02E-1053111No hitNo description
SuperFamilySSF474597.46E-1354124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.0955107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-856108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-1056125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDEMFFHFSS GSDPQNTIPH DEILDYVPMG GSSSRGRQRK LLSTEKRENS NADDKKKSMH  60
RDIERQRRQE MSTLYASLRT LLPLEYIKGK RAISDHMNGA VSYVKDLQKR IDGLNAKRDE  120
LKKASDNWSG FEQGMTSNEA FPSSAVVRQS LDGVEVVIST SVGPKALTLS RVLQLLLEEG  180
LDVVNCITTR IDGGLIHTIQ TEVSDLRGVH VPYLEQKLNK VISSLSQTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486480.11e-164PREDICTED: transcription factor bHLH126-like
SwissprotQ9STJ61e-48BH126_ARATH; Transcription factor bHLH126
TrEMBLA0A0D2S5Z01e-169A0A0D2S5Z0_G
STRINGPOPTR_0015s14070.13e-59(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.17e-50bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]